Hi @carlos. It would be super cool to have the microscope working with a Jetson, especially seeing as it supports the camera. Unfortunately no one in the core team has the bandwidth for doing that right now.
First I would check whether you can pip install picamerax and sangaboard and whether the picamera works in python.
If this all works I would have a look at the Raspian OpenFlexure repo where we build the images for the pi: https://gitlab.com/openflexure/pi-gen
I think the key place to look is stage2/04-install-ofm-server
@jc2450 is the best person to ask about this.